Chemistry 3D Molecules Visualizer
This application can interpret almost every molecule that you came up with. It will create all the atoms and their respective bonds. The size will be proportional to their real radius. You can import special files for chemistry with the extension xyz. This files contain the position of the atoms and their names. With that information we can interpret where the bonds are, the mass, radius and colour.
Here is the demo of the 3D Simulation:
Download application: https://www.retopall.com/3DChemistry/Molecules.php
If you have the programming tier you will be able to download the source code:
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